YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60031581
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERWTEAAAA GSGTSVARSA GPSRSCALLL RVRVRVTMAS SEEDGTNGAS EASDEKEAAG  60
   61 KRRRLGLLAT AWLTFYNIAM TAGWLVLAIA MVRFYMEKGT HRGLYKSIQK TLKFFQTFAL 120
  121 LEVVHCLIGI VPTSVLVTGV QVSSRIFMVW LITHSIKPIQ NEESVVLFLV SWTVTEITRY 180
  181 SFYTFSLLDH LPHFIKWARY NLFIILYPVG VAGELLTIYA ALPYVKKSGM FSVRLPNKYN 240
  241 VSFDYYYFLL ITMASYIPLF PQLYFHMLRQ RRKVLHGEVI AEKDD

Type	Start	End	Confidence
Cytoplasmic	1	67	0.89
Transmembrane Helix	68	91	0.86
Non-Cytoplasmic	92	120	0.83
Transmembrane Helix	121	142	0.85
Cytoplasmic	143	201	0.81
Transmembrane Helix	202	222	0.95
Non-Cytoplasmic	223	244	0.84
Transmembrane Helix	245	265	0.94
Cytoplasmic	266	285	0.86