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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85677493, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPSGRAS RTPVLVFLPL LLLTGTLTAQ ELPVNGVNGF SLHPPYFNLA EGTKITATAT  60
   61 CGVDENEQPI QDLYCKLVGG PVSGDPSQTI QGQYCDICSS QDTNRAHPIS NAIDGTERWW 120
  121 QSPPLSRSAK HNQVNVTLDL GQLFHVAYVL IKFANSPRPD LWVLERSIDF GKTYQPWQFF 180
  181 ASSKRDCIER FGQRTIERIY HDDDVICTTE YSRIVPLENG EIVVSLVNGR PGAMNFSYSP 240
  241 VLREFTKATN IRLRFLRTNT LLGHLMGKTL RDPTVTRKYY YSIKDISIGG RCVCNGHAEA 300
  301 CNAQDPNDPY KLQCDCQHNT CGTSCDGCCP GFNQFPWKPA TTYSANECEP CNCHRHSSEC 360
  361 YYDPEIDQRR SSLDMQGEYN GGGVCVECQH HTTGVNCERC IPGYYRSPDH PLESPFACSK 420
  421 CQCESEFTEG TCEDRTGRCY CKPNYTGENC DQCAEGYEHF PECYQVLING EVRPAGENII 480
  481 DCECNAAGTE GNSCRPDPRT NTCVCKPEFT GEHCDTCSHG YFSINCQRCQ CSGQGCLDGS 540
  541 CDAVTGQCVC RSGFQGYSCE QCAPGYFNYP LCQYCGCSVV GSIPEMCDPA GRCLCRPEFT 600
  601 GPRCDQCQSG FHSYPNCQVC TCDPRTSLDS SCSELDQCNC RPNYSGPRCQ QCAPGYYSYP 660
  661 SCTPCDCSVE GSRSSSCDPV SGQCVCLPNI EGQRCDSCSP GSYGFPLCQL GTCNPAGSVH 720
  721 NDILPTVGSC VCRPYVEGVA CERCKPLYWN LSPDTIYGCS TCDCNTAGTL SEVAECTQRT 780
  781 GQCFCKPNVC SGTCNVCKDG FFNLQKDSYF GCQGCQCDIG GSVGQACDER YGRCRCRPNV 840
  841 EGPKCKQPRP DHYFPDLHHM KFEVEDGTTM DGRPVRFGYN PLEFESFSWR GYAQMSPIQP 900
  901 RVLVEVVVGS PDLFHVVLHY VNRGGVDVTG QVSVIEDGRH VLCGNCSEQS KQIVFAPSSE 960
  961 PTFVNVPQNS FVEPFVLNPG TWTVIIEAEG ILLDYLVLLP SAYYEAPILQ LQVTEPCSYS1020
 1021 HTQDASQNCL QYMYLSLDEF PSISSNDASC RSDNHLPRPC HTEKITPRHP SMAICSGNDI1080
 1081 SVGLRGRVPV PGEYVLVVEY ASEDQAPQNL TVSVSSAGES THQEQITLLH CKYSFLCRSV1140
 1141 SVDDMKRVAL FTISANAEIQ LIAERSSFFL HKVFLIPRAQ FTMEYLKPRV HCISTHGHFA1200
 1201 PDSGSCIPSR FQNPPQSLVL KEGQASSVAE PILASAPDPS LYADRPMTST PPTATDNTEH1260
 1261 VLLDTSQNAV VYSTRVHALG RYVFILHYHQ PLHPTYNVQV FINGGRIWQG NVNASFCPHG1320
 1321 YGCRSVVMSE NQIILDVTDH EVILTLRVPD RKTLWLDYVL VVPEGSYSSS FLSEELLDKS1380
 1381 YDFISNCGQN SFYINPSSAS AFCLSSAVSL SSFFNNGAVP CGCHEVGAES DTCESFGGQC1440
 1441 RCRPNVIGRD CSQCATGYYG FPNCRPCNCG SRLCEPVTGE CICPPRTLQP DCVTCEPQTF1500
 1501 GCHPLVGCEM CNCSRPGVTS MDISCDTNNG QCRCRNNIVG RQCDRCFPGF YGYPNCRPCN1560
 1561 CNEAGTEMNV CDSFTGRCLC KENVEGPRCD QCKLGTFHLD PTNAKGCTKC FCFGATDRCH1620
 1621 SSDKRRSEIM DMAGWVLLRS DRQEVPVSTY LDQDLVEADL SDVPDVSQDL HWHAPQAYHG1680
 1681 DKVSSYGGYL RYRLHTQTMR GDAFLMVETI RPDVILKGNQ MTLVYMEREY PSPEDPHEGI1740
 1741 VHLVEESFRH AQTGNSVSRE ELMMVLVALE SLQIRALHSQ SAQSVSLRAA VLEVAENMPS1800
 1801 GRHANNVEIC LCPGNYLGDS CQQCAPGYYR DNKGLFLGKC VPCNCNGHSD QCLDGSGICV1860
 1861 NCRHNTAGNH CEKCLGGFHH NNTVDGHSVS CSSCPCPLQV ASNNFAIRCV EKPNNMRCLC1920
 1921 MPGYAGSKCE RCAPGYYGNP VVIGSTCQPC NCNGNSDPNM LFSDCHPLTG ECQSCMHNTA1980
 1981 GPHCEICAPG FYGDAITAKN CTRCNCSPCG TAHCDSHTGQ CHCKPGVVGA QCDRCEHGTF2040
 2041 GFDSCTGCRK CDCDASAALV QACDPVNGAC ACQPGVNGPN CHQCAPGHWN YSSNGCRKCE2100
 2101 CKGGRCDPRT GECRCTTGLT GKQCDTCLSQ HSVPVQNGAD MHCQPCDSCV MVLLEDLDRI2160
 2161 SHFYESVANQ LTSLNASTFA WTQLNRLNAS IADIANAITN YNSTLDKSRN RASVLEGELE2220
 2221 IIDSDIKDLE KKASVTQKKK DALEDNINST HTRAQELFGF IKGIMRDVKD IIQQVNRTAQ2280
 2281 NETQVMDEKD LARKIAEVES MLRNMRFRGF DYQKNKAKNE LDQANNLVDR VINEIANRTW2340
 2341 NNEAVAENIR NKLKQFNEQL MDLRDAMNEA VNNTAQTVEA NNINQKHLED LQKKVNSLHE2400
 2401 KYKEVVSQLQ MAEDDVTQVN DLLSMLQDSK EDYEHLAAQL DGARQPLAEK VQKYAPAANK2460
 2461 IPLVEAAEKH AEMLEQLANN LSSLISGSNQ DNFIQRALNA SRAYTNIINS VLEAETTALK2520
 2521 ANETASMALE NIRDKDLPAQ AAALKNQSTE LLKSAEELNN SSQSLKPRVD TIKMSLLDAE2580
 2581 KKKEKMLQDL KDIQNKLNVS RDDIVNSISA AKSAVEQANN TVANVSGVLA PIQKQLEEWQ2640
 2641 KQYGDSNATS EDINKALNDA NTSVAALSDT LPKLIKKLDR LHNTTFQPSN ISDSIQRIRQ2700
 2701 LIEQARNAAN KVSVSMQFNG KSGVQVRTPS NVADLAAYSS LQMYIKLPSP TIKKKRQTEA2760
 2761 TNPQFVLYLG NRDSSKEYMA VTLNGKKLRW HFNVGGSSVD VLMDEDVKND FFNKLILERT2820
 2821 LQYGQMSMTT DQDENNIIKR IMEAKGQKGL LNLPAEETVF YVGGFPSTFS PPGTLNLSSP2880
 2881 LDFFKGYVEL LSINEELISL YNFEQTFDMN TTTDAPCSRK RPANTPEWVV DGVYFDGTGY2940
 2941 VEVLFETQKG DRTFDQTIRL ISQNGILLSF QREDKYVTIA VLDGFLRVFY NVEGSLMPGP3000
 3001 GNPTKISNAD KKTLQVILQL NNMKMLVRLD RETLYTLYSE ELNFTGRYFL GGVPEAEMPN3060
 3061 DLKSIYLKHG SIRGCFRIIK SMGSFVQIKT MKSSGISFGC PDDLLFTREA HFTGEGYLGL3120
 3121 KMDYVDLANS FYGGIGFRTD QQNGLMFYHQ NKDNVCKVML DNGHVLVSTD RKEVKSQKTY3180
 3181 NDDNNHYVAV YRDQNVLSIY IDDVLESSGE TGNVTTRRNA LQEGFTYVGG TPESNGPTNL3240
 3241 TGCISNFFIK RANEPQIVED LKTALEGRKY TFTCPDASAP LQMLNSPRPK KNAPGNSRSR3300
 3301 MARDSCQGDT SVQEVDAHHF SGSTHSHMRF DSLPQAFSKA PHFSISVRVN SSSGLIFHVA3360
 3361 GGKGQRMMAL SVSDGHLTLL VNGGKRKTSI RSKKRYSDGL WHTVFVKVEG DRGSLTVDGI3420
 3421 DTQNKRVSAG GKSMFAAPLY IGGLPVDHSA AMAGFVGCVR DLKLNEVSLQ SPSVSVGVTP3480
 3481 CYQQPLQPGA HFSSRGGFMT IDESLVLGQD LEIQLEVRLD SGSGLLLHTG AKKTHQLSVY3540
 3541 LEQGQVTVLM NSGSGEFSFS LTPKESLCDG GWHTIAIVKK SNVIQLHVDS FSEHGVAPKQ3600
 3601 SRSNGGKEAV YLGGLPETIT VPGLSSSVQS FQGCVRKAVL NHRPVMLSKP LSVSGSVGTQ3660
 3661 GCPA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle