YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83814119, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	36	0.92
Non-Cytoplasmic	37	57	0.87
Transmembrane Helix	58	78	0.95
Cytoplasmic	79	91	0.85
Transmembrane Helix	92	115	0.83
Non-Cytoplasmic	116	134	0.95
Transmembrane Helix	135	157	0.89
Cytoplasmic	158	196	0.94
Transmembrane Helix	197	217	0.93
Non-Cytoplasmic	218	235	0.80
Transmembrane Helix	236	255	0.97
Cytoplasmic	256	275	0.90
Transmembrane Helix	276	296	0.94
Non-Cytoplasmic	297	316	0.87
Transmembrane Helix	317	335	0.95
Cytoplasmic	336	342	0.90
Transmembrane Helix	343	364	0.89
Non-Cytoplasmic	365	384	0.86
Transmembrane Helix	385	406	0.92
Cytoplasmic	407	465	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRHAEKKA PLAWYVAFAV SLSGALLLIG LLAYVVWNGI GVWGNNQPVG WGWPIVNFVF  60
   61 WVGIGHAGTL ISAILYLFRQ HWRTAINRAA EAMTIFAVIC ALIWPTFHVG RVWAIYWTLP 120
  121 IPNQMAMWPQ FKSPLLWDVF AVSSYFIVST LFWYVGLVPD LATLRDRAKN FWRQRILAFF 180
  181 SLGWTGSNRH WRNYEKAYLL LAGLATPLVL SVHSVVSFDF AVSVIPGWHT TIFPPYFVAG 240
  241 AIFSGFAMVV TLMVITREIY GLKNLITIDH LEKMNIIILV TGSIVGFAYI TEFFMAWYSG 300
  301 VEYEQYAFIN RAFGPYAWAY WIMMTCNLVT PQLFWSKRLR RSIPVMFALS IVVNIGMWFE 360
  361 RFVITITSLH RDFLPSSWGY FTATWVDIGT FVGSFGLFFT LFLLFLRFVP MVAMAEVKGV 420
  421 MPEADPHHYD HGGNGHAEGD GEPYIKPAEP ALAEAYRNDG ADASG