YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62666954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDCQENEYR DQWGRCVTCQ QCGPGQELSK DCGYGEGGDA YCIACPPRKY KSTWGHHRCQ  60
   61 TCITCAVINR VQKANCTNTS NAICGDCLPR FYRKTRIGGL QDQECIPCTK QTPSSEVQCT 120
  121 FQLSLVKVDT HTLPPKEATL VALVGSLLVV FALAFLGLFF LYCKQIFNRH CQCGGSLQYE 180
  181 AEKAVQEDSL LTTPPGQETS PEFPANGSIF EIKPLNSILD DDCSSTRGFP TQESFTMASC 240
  241 ASESHSQWVH TPIECTELDL QKFSSSVPCP GAETLRENTA EHSGDRLDLY VPFEVPSL

Type	Start	End	Confidence
Cytoplasmic	1	139	0.66
Transmembrane Helix	140	162	0.92
Non-Cytoplasmic	163	298	0.67