YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62663393, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGQGRGDA KASPGEGETG GAGLGPPSEG RGQGGLRRGW RLWGGGVATA DYAAGGQERA  60
   61 GLHGGPRSLP RRLGIGTARE RHACALRPVT HSGMDSGSLA AERPKRTPGR QRLLSSGCGV 120
  121 PVRPGVSTLP GGRSWLRPRG RTARASRLLL LLLVPSPRLA ATAPRRTLAE RSRPGLVIPA 180
  181 AALGAGRNAL GRLRLGARRV AALVSSRREL SLSARCHQLE PRKGNLPTSV SRQLYFDTHA 240
  241 LVCLLEANGF TIQQAEIIVS ALVKITETNM DIIYKDMVSK MQQEITLQQI ISKIANVKKD 300
  301 MIILEKSEFS ALRAENEKIK LELHQLKQQV MDEVTKVRTD TKLNFNLEKS RVKELYSLNE 360
  361 KKMLELRTEI VSLHAQQDRA LTQTDRKIET EVAGLKTMLE AHKLDTIKYL AGSVFTCLTV 420
  421 ALGFYRLWI

Type	Start	End	Confidence
Cytoplasmic	1	144	0.55
Transmembrane Helix	145	161	0.36
Non-Cytoplasmic	162	174	0.68
Transmembrane Helix	175	191	0.33
Cytoplasmic	192	405	0.55
Transmembrane Helix	406	427	0.68
Non-Cytoplasmic	428	429	0.68