YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62662991, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTYSKGPDL QSAPLGMDKS AKNLPPPRLC FCPEKGEDMK VGYVPITPQK EGAWVGICRD  60
   61 RRLLAATLLL ALLSSSFTAM SLYQLAVLQA DLMSLRMELQ SYRSSATPAA PGAPGLSAGV 120
  121 KLPTPAAPGP HNSSRGQRNR RAFQGPEETE QDVDLSATPV PSLPGNCHAS HHDENGLNLR 180
  181 TIIQDCLQLI ADSNTPTIRK GTYTFVPWLL SFKRGNALEE KENKIVVRQT GYFFIYSQVL 240
  241 YTDPIFAMGH VIQRKKIHVF GDELSLVTLF RCIQNMPKTL PNNSCYSAGI AKLEEGDEIQ 300
  301 LAIPRENAQI SRNGDDTFFG ALKLL

Type	Start	End	Confidence
Cytoplasmic	1	63	0.92
Transmembrane Helix	64	87	0.85
Non-Cytoplasmic	88	325	0.94