YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62662470
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQCYYNETI GFFYNNSGKE LSLHWRPKDV VVVALGLTVS VLVLLTNLLV IAAIASNRRF  60
   61 HQPIYYLLGN LAAADLFAGM AYLFLMFHTG PRTARLSIKG WFLRQGLLDT SLTASVATLL 120
  121 AIAVERHRSV MAVQLHSRLP RGRVVTLIVG VWVAALGLGL LPAHFWHCLC DLDSCSRMVP 180
  181 LFSRSYLAVW ALSSLLVFLL MVAVYTRIFF FVRRRVERMA EHVSCHPRYR ETTLSLVKTV 240
  241 VIILGAFVVC WTPGQVVLLL DGLDCKSCNV LAVEKYFLLL AEANSLVNAV VYSCRDAEMR 300
  301 RTFRRLLCCT CLRWSHHKSA HYSSSARTGA STRIMLPENG HPLMDSTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.88
Transmembrane Helix	31	54	0.91
Cytoplasmic	55	63	0.81
Transmembrane Helix	64	86	0.91
Non-Cytoplasmic	87	104	0.79
Transmembrane Helix	105	124	0.85
Cytoplasmic	125	143	0.93
Transmembrane Helix	144	166	0.91
Non-Cytoplasmic	167	186	0.95
Transmembrane Helix	187	211	0.91
Cytoplasmic	212	233	0.96
Transmembrane Helix	234	254	0.80
Non-Cytoplasmic	255	276	0.78
Transmembrane Helix	277	295	0.41
Cytoplasmic	296	348	0.54