YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62661829, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRRSQRAC ASAPSMLSSA RGSPELRRRS ASEAEVSAAA EGATGSEVAP PGDRGGRTRG  60
   61 SGRGSAATAS STGEAEGAER GADTPARKPD PEAGRMDHHQ LGTGRYQVLH NEDDNSESSA 120
  121 PEQPSASSSA AQPVEAAASA PALDADSSPP PYSSITVDGP TTSDADVYSE FYPVPPPYSV 180
  181 ATSLPTYDEA EKAKAAALAA AAADAPQRNQ EEECPPRDDF SDVEQLRVGN DGIFMLAFFM 240
  241 AFIFNWLGFC LSFCITNTIA GRYGAICGFG LSLIKWILIV RFSDYFTGYF NGQYWLWWIF 300
  301 LVLGLLLFFR GFVNYLKVRN MSESMAAAHR TRYFFLL

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	231	0.99
Transmembrane Helix	232	253	0.90
Cytoplasmic	254	258	0.78
Transmembrane Helix	259	279	0.89
Non-Cytoplasmic	280	293	0.86
Transmembrane Helix	294	314	0.93
Cytoplasmic	315	337	0.94