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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62659698, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIPRMPLV LLLLLLILGS AKAQVNPAIC RYPLGMSGGH IPDEDITASS QWSESTAAKY  60
   61 GRLDSEEGDG AWCPEIPVQP DDLKEFLQID LRTLHFITLV GTQGRHAGGH GIEFAPMYKI 120
  121 NYSRDGNRWI SWRNRHGKQV LDGNSNPYDV FLKDLEPPIV ARFVRLIPVT DHSMNVCMRV 180
  181 ELYGCVWLDG LVSYNAPAGQ QFVLPGGSII YLNDSVYDGA VGYSMTEGLG QLTDGVSGLD 240
  241 DFTQTHEYHV WPGYDYVGWR NESATNGFIE IMFEFDRVRN FTTMKVHCNN MFAKGVKIFK 300
  301 EVQCYFRSET SEWEPTAVYF PLVLDDVNPS ARFVTVPLHH RMASAIKCQY HFADTWMMFS 360
  361 EITFQSDAAM YNNSGALPTS PMAPTTFDPM LKVDDSNTRI LIGCLVAIIF ILLAVIVIIL 420
  421 WRQFWQKMLE KASRRMLDDE MTVSLSLPSE SSMFNNNHSS SPSEQESNST YDRIFPLRPD 480
  481 YQEPSRLIRK LPEFAPGEEE SGCSGVVKPA QPNGPEGVPH YAEADIVNLQ GVTGGNTYSV 540
  541 PAVTMDLLSG KDVAVEEFPR KLLAFKEKLG EGQFGEVHLC EVEGMEKFKD KDFALDVSAN 600
  601 QPVLVAVKML RADANKNARN DFLKEIKIMS RLKDANIIRL LAVCITEDPL CMITEYMENG 660
  661 DLNQFLSRHE PLSSGSSNAT VSYANLKFMA TQIASGMKYL SSLNFVHRDL ATRNCLVGKN 720
  721 YTIKIADFGM SRNLYSGDYY RIQGRAVLPI RWMSWESILL GKFTTASDVW AFGVTLWETF 780
  781 TFCQEQPYSQ LSDEQVIENT GEFFRDQGRQ IYLPQPAVCP DSVYKLMLSC WRRETKHRPS 840
  841 FQEIHLLLLQ QGAE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle