YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109498547, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.98
Transmembrane Helix	69	87	0.92
Non-Cytoplasmic	88	102	0.75
Transmembrane Helix	103	124	0.89
Cytoplasmic	125	238	0.99
Transmembrane Helix	239	259	0.86
Non-Cytoplasmic	260	267	0.82
Transmembrane Helix	268	289	0.94
Cytoplasmic	290	296	0.90
Transmembrane Helix	297	319	0.89
Non-Cytoplasmic	320	328	0.84
Transmembrane Helix	329	348	0.95
Cytoplasmic	349	359	0.93
Transmembrane Helix	360	382	0.89
Non-Cytoplasmic	383	395	0.81
Transmembrane Helix	396	412	0.63
Cytoplasmic	413	413	0.25
Transmembrane Helix	414	442	0.78
Non-Cytoplasmic	443	452	0.50
Transmembrane Helix	453	476	0.88
Cytoplasmic	477	524	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPRLHRGA GRPGGLSSSP PFRQVSARFA RIAFEDLREA LATRLQMVYV FIMNRVNSQS  60
   61 SGFSQRRRMA LGIVILLLVD VIWVASSELT SYVFTQYNKP FFSTFAKTSM FVLYLLGFII 120
  121 WKPWRQQCTR GFRGKPAAFF ADAEGYFAAC TTDSSMSSSL SEPLYVPVKF HDLPSEKLES 180
  181 TNIGTEKPPK KSRVRFSNIM EIRQLPSSHA LEAKLSRMSY PTVKDQESIL KTVGKLTATQ 240
  241 VAKISFFFCF VWFLANLSYQ EALSDTQVAI VNILSSTSGL FTLILAAVFP SNSGDRFTLS 300
  301 KLLAVILSIG GVVLVNLSGS EKSAGRDTIG SIWSLAGAMF YAVYIVMIKR KVDREDKLDI 360
  361 PMFFGFVGLF NLLLLWPGFF LLHYTGFEDF EFPNKVVLLC IIINGLIGTV LSEFLWLWGC 420
  421 FLTSSLIGTL ALSLTIPLSI IADMCMQKVQ FSWLFFAGAI PVFFSFFIVT LLCHYNNWDP 480
  481 VMVGVRRVFA FICRKHRIQR VSEDSEQCES LISMHSVSQE DGAA