YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62656341, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAEAAVVA TAAPAATVPA TAAGVVAVVV PVPAGEPQKA GGGAGGGGGA ASGPAAGTPS  60
   61 APGPRTPGNQ ATAASGTPAP PARSQADKPV LAIQVLGTVK WFNVRNGYGF INRNDTKEDV 120
  121 FVHQTAIKRN NPRKFLRSVG DGETVEFDVV EGEKGAEAAN VTGPGGVPVK GSRYAPNRRR 180
  181 FRRFIPRPRP AAPPPMVAEA PSGGTEPGSE GERAEDSGQR PRRRRPPPFF YRRRFVRGPR 240
  241 PPNQQQPIEG SDGVEPKETT PLEGDQQQGD ERVPPPRFRP RYRRPFRPRP PQQPTTEGGD 300
  301 GETKPSQGPT DGSRPEPQRP RNRPYFQRRR QQPPGPRQPI AAETSAPINS GDPPTTILE

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	359	0.99