YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167555101, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLDCFCAS RTRVESLRPE KQSETSIHQY SVDEPAISWS PPCATTNEVL CSTDATHYEL  60
   61 HVEIGRGFDN LTSVHLARHT PTGTLVTIKI TNLETCTDER LRALQRAVIL SHFFQHPNIT 120
  121 TYWTVFTVGS WLWVIYPFMA YGSASQLLRT YFPDGMSETL IRNILFGAVR GLNYLHQNGC 180
  181 IHRSFKASHI LISGDGLVTL SGLSHLHSLV KHGQRHRAVF DFPQFSTSVQ PWLSPELLRQ 240
  241 DLHGYNVKSD IYSVGITACE LASGQVPFQD MHSTQMLLQK LKGPPYSPLD VSIFPQSDSR 300
  301 MRNSQSGVDS GIGESVLVST GTHTVNSDRL HTPSTRTFSP AFFSLVQLCL QQDPEKRPSA 360
  361 SSLLSHVFFK QMKEESQDSI LSLLPPAYNR PAASLPPVSP WSELEFQFPD DKDPDWEF

Type	Start	End	Confidence
Cytoplasmic	1	118	0.77
Transmembrane Helix	119	140	0.78
Non-Cytoplasmic	141	418	0.77