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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149046180, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHIHTKFC LICLLTFIFH HCNHCHEDHD HGPEELHRHH RGMTESESST FSVQDAENEK  60
   61 KYYIEKLFDR YGENGRLSFF GLEKLLTNLG LGEIKVVEIN HEDLGHDHVS HLDILAVQEG 120
  121 KHFHSHNHQH FHNHLNAENH TATSITSKRN HKCDPEREAA EVPIKPEDKH PHDRNHRFHH 180
  181 RHRLHHHLDH NTTRRVHNDS IAHSEHGEPG HGPSTETNKT QEQSEVKSGK VRRKEKGKRK 240
  241 KENSEVNTPG FLPTHGHGEQ YEHNRVHKLD RVHSPGHPHA HLPEHSGHEL GHGHQEFDPD 300
  301 NEGELRHTRK REAPHVKKSA IYSTPSHKDH NEDDRQHECL NVTQLLKHFG LGPSSPISPD 360
  361 LFTYLCPALL YQIDSRLCIE HFDKLLVEDL NKDKALVPED KANIGASAWI CGIISITVIS 420
  421 LLSLLGVILV PIINQGCFKF LLTFLVALAV GTMSGDALLH LLPHSQGGHD HSHQHAHGHG 480
  481 HSHGHESKKF LEEYDAVLKG LVALGGIYLL FIIEHCIRMF KHYKQQRGKQ KWFMKQSTEE 540
  541 STIGRKLSDH KLNSTPDADW LQLKPLAGTD DSVVSEDRLN ETELTDLEAQ QESPPKNYLG 600
  601 VEEEKIMDHS HSDGLHTIHE HEVHVVSHNH RDEEDTAVLR KHGHQWHHRH AHHSHGPCHS 660
  661 GSDLKETGIA NIAWMVIMGD GIHNFSDGLA IGAAFSAGLT GGISTSIAVF CHELPHELGD 720
  721 FAVLLKAGMT VKQAIVYNLL SAMMAYIGML IGTAVGQYAN NITLWIFAIT AGMFLYVALV 780
  781 DMLPEMLHGD GDHEEHGFCP VGQFILQNLG LLFGFALMLV IALYEDRIVF DIQF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle