YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62654799, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.56
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	880	0.99
Transmembrane Helix	881	903	0.94
Cytoplasmic	904	911	0.92
Transmembrane Helix	912	931	0.96
Non-Cytoplasmic	932	944	0.71
Transmembrane Helix	945	964	0.89
Cytoplasmic	965	982	0.88
Transmembrane Helix	983	1002	0.95
Non-Cytoplasmic	1003	1020	0.91
Transmembrane Helix	1021	1044	0.89
Cytoplasmic	1045	1070	0.91
Transmembrane Helix	1071	1090	0.59
Non-Cytoplasmic	1091	1096	0.46
Transmembrane Helix	1097	1119	0.89
Cytoplasmic	1120	1125	0.58
Transmembrane Helix	1126	1149	0.85
Non-Cytoplasmic	1150	1522	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVRNLLIY IFSTYLLVMF GFNAAQDFWC STLVKGVIYG SYSVSEMFPK NFTNCTWTLE  60
   61 NPDPTKYSIY LKFSKKDLSC SNFSLLAYQF DHFSHEKIKD LLRKNHSIMQ LCSSKNAFVF 120
  121 LQYDKNFIQI RRVFPSDFPG LQKKGEEDQK SFFEFLVLNK VSPSQFGCHV LCTWLESCLK 180
  181 SENGRTESCG VMYTKCTCPQ HLGEWGIDDQ SLVLLNNVVL PLNEQTEGCL TQELQTTQVC 240
  241 NLTREAKRPP KEEFGMMGDH TIKSQRPRSV HEKRVPQEQA DAAKFMAQTG ESGVEEWSQW 300
  301 STCSVTCGQG SQVRTRTCVS PYGTHCSGPL RESRVCNNTA LCPVHGVWEE WSPWSLCSFT 360
  361 CGRGQRTRTR SCTPPQYGGR PCEGPETHHK PCNIALCPVD GQWQEWSSWS HCSVTCSNGT 420
  421 QQRSRQCTAA AHGGSECRGP WAESRECYNS ECTANGQWNQ WGHWSGCSKS CDGGWERRVR 480
  481 TCQGVTVTGQ QCEGTSEEIR RCSEQRCPAP YEICPEDVLI SMVWKRTPAG DLAFNQCPLN 540
  541 ATGTTSRRCS LSLHGVASWE QPSFARCISN EYRHLQHSIK EHLAKGQRML AGDGMSQVTK 600
  601 TLLDLTQRKN FYAGDLLVSV EILRNVTDTF KRASYIPASD GVQNFFQIVS NLLDEENKEK 660
  661 WEDAQQIYPG SIELMQVIED FIHIVGMGMM DFQNSYLMTG NVVASIQKLP AASVLTDINF 720
  721 PMKGRKGMVD WARNSEDRVV IPKSIFTPVS SKELDESSVF VLGAVLYKNL DLILPTLRNY 780
  781 TVVNSKIIVV TIRPEPKRTD AFLEIELAHL ANGTLNPYCV LWDDSKSNES LGTWSTQGCK 840
  841 TVLTDASHTK CLCDRLSTFA ILAQQPREIV MESSGTPSVT LIVGSGLSCL ALITLAVVYA 900
  901 ALWRYIRSER SIILINFCLS IISSNILILV GQTQTHNKSI CTTTTAFLHF FFLASFCWVL 960
  961 TEAWQSYMAV TGKIRTRLIR KRFLCLGWGL PALVVATSVG FTRTKGYGTD HYCWLSLEGG1020
 1021 LLYAFVGPAA AVVLVNMVIG ILVFNKLVSR DGILDKKLKH RAGQMSEPHS GLTLKCAKCG1080
 1081 VVSTTALSAA TASNAMASLW SSCVVLPLLA LTWMSAVLAM TDKRSILFQI LFAVFDSLQG1140
 1141 FVIVMVHCIL RREVQDAFRC RLRNCQDPIN ADSSSSFPNG HAQIMTDFEK DVDIACRSVL1200
 1201 HKDIGPCRAA TITGTLSRIS LNDEEEEKGT NPEGLSYSTL PGNVISKVII QQPTALHMPM1260
 1261 SMNELSNPCL KKENTELRRT VYLCTDDNLR GADMDIVHPQ ERMMESDYIV MPRSSVSTQP1320
 1321 SMKEESKMNI GMETLPHERL LHYKVNPEFN MNPPVMDQFN MNLDQHLAPQ EHMQNLPFEP1380
 1381 RTAVKNFMAS ELDDNAGLSR SETGSTISMS SLERRKSRYS DLDFEKVMHT RKRHMELFQE1440
 1441 LNQKFQTLDR FRDIPNTSSM ENPAPNKNPW DTFKTPSEYP HYTTINVLDT EAKDALELRP1500
 1501 AEWEKCLNLP LDVQEGDFQT EV