YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149041547, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	418	0.83
Transmembrane Helix	419	443	0.92
Cytoplasmic	444	594	0.99
Transmembrane Helix	595	617	0.92
Non-Cytoplasmic	618	649	0.94
Transmembrane Helix	650	668	0.94
Cytoplasmic	669	693	0.85
Transmembrane Helix	694	715	0.87
Non-Cytoplasmic	716	722	0.81
Transmembrane Helix	723	742	0.90
Cytoplasmic	743	752	0.86
Transmembrane Helix	753	773	0.95
Non-Cytoplasmic	774	779	0.81
Transmembrane Helix	780	802	0.91
Cytoplasmic	803	834	0.95
Transmembrane Helix	835	855	0.92
Non-Cytoplasmic	856	861	0.85
Transmembrane Helix	862	883	0.93
Cytoplasmic	884	892	0.91
Transmembrane Helix	893	914	0.94
Non-Cytoplasmic	915	944	0.97
Transmembrane Helix	945	964	0.94
Cytoplasmic	965	979	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAGGRSPA VYRGAAPGGP EFCAASAALK GPASGKPTGQ GHRRLGSPGA SGRRVSSRAG  60
   61 PGWGCGSRCR PREPGSARGP GAAPGRGRVL SQAGVKVLVP VRCWKLLRQP QRARSPSRRQ 120
  121 PPPPRAMIAW RLPLCVLLVA AVESHLGALG PKNVSQKDAE FERTYADDVN SELVNIYTFN 180
  181 HTVTRNRTEG VRVSVNVLNK QKGAPLLFVV RQKEAVVSFQ VPLILRGLYQ RKYLYQKVER 240
  241 TLCQPPTKNE SEIQFFYVDV STLSPVNTTY QLRVNRVDNF VLRTGELFTF NTTAAQPQYF 300
  301 KYEFPDGVDS VIVKVTSKKA FPCSVISIQD VLCPVYDLDN NVAFIGMYQT MTKKAAITVQ 360
  361 RKDFPSNSFY VVVVVKTEDQ ACGGSLPFYP FVEDEPVDQG HRQKTLSVLV SQAVTSEAYV 420
  421 GGMLFCLGIF LSFYLLTVLL ACWENWRQRK KTLLVAIDRA CPESGHPRVL ADSFPGSAPY 480
  481 EGYNYGSFEN GSGSTDGLVE STGSGDLSYS YQGHDQFKRR LPSGQMRQLC IAMDRSFDPV 540
  541 GARPRLDSMS SVEEDDYDTL TDIDSDKNVI RTKQYLCVAD LARKDKRVLR KKYQIYFWNI 600
  601 ATIAVFYALP VVQLVITYQT VVNVTGNQDI CYYNFLCAHP LGNLSAFNNI LSNLGYILLG 660
  661 LLFLLIILQR EINHNRALLR NDLYALECGI PKHFGLFYAM GTALMMEGLL SACYHVCPNY 720
  721 TNFQFDTSFM YMIAGLCMLK LYQKRHPDIN ASAYSAYACL AIVIFFSVLG VVFGKGNTAF 780
  781 WIVFSVIHII STLLLSTQLY YMGRWKLDSG IFRRILHVLY TDCIRQCSGP LYTDRMVLLV 840
  841 MGNIINWSLA AYGLIMRPND FASYLLAIGI CNLLLYFAFY IIMKLRSGER IKLIPLLCIV 900
  901 CTSVVWGFAL FFFFQGLSTW QKTPAESREH NRDCILLDFF DDHDIWHFLS SIAMFGSFLV 960
  961 LLTLDDDLDT VQRDKIYVF