YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62652698, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPEKKCFL ETVFFYLLDT RSLEDLQLLL TEEESWRHFV AGVGLSREEE DALREALAEI  60
   61 FEDSDGEEED KLQSDPQDKK ERKEEDALRE ALGGNTADSD TEDEDQLQND KERFLEAYPQ 120
  121 VRLELEKHIK KLHALADKVD KVHRDCTVSQ VVASSSSAVS GVLTILGLAL APVTAGVSLA 180
  181 LSATGMGLGA AAAVTSVSTS IVEKVSLASA EAEASKLVPT KDTMNRMKEV LEQSGPRLAS 240
  241 LSTNSIQNIQ AIQKNMNAIQ LAKANPHLAT NAKRLMTTGK TSTQTTGQVQ KAFGGTALAM 300
  301 TKEARIIGAA TVGLFLLMDV VRLVEDSKHL HEGAKSVSAA ELRRQARDLE QKLQELNQVH 360
  361 DSLTQ

Type	Start	End	Confidence
Cytoplasmic	1	150	0.80
Transmembrane Helix	151	171	0.68
Non-Cytoplasmic	172	178	0.49
Transmembrane Helix	179	202	0.66
Cytoplasmic	203	365	0.67