YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAAT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWRTLVASN FSTCPNGSIQ WIWDVFGECA QDGWDEASVA LGLVSIFCFA ASTFPQYIKA  60
   61 CKTGNMDQAL SLWFLLGWIG GDSCNLIGSF LADQLPLQTY TAVYYVLADL LMLTLYFHYK 120
  121 FKKQPSLLSA PINSVLLFIL GTVCITPLLS STDPVAVPRE GFRGRTLLSV EPGNKPFTKK 180
  181 EVVGFVIGSA SSVLYLLSRL PQIRTNFVRQ STQGISYSLF ALVMLGNTLY GLSVLLKNPE 240
  241 VGQSEGSYLL HHLPWLVGSL GVLLLDTIIS IQFLVYRSHD ADAASEREPL LPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.62
Transmembrane Helix	37	58	0.79
Cytoplasmic	59	69	0.90
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	99	0.84
Transmembrane Helix	100	119	0.94
Cytoplasmic	120	128	0.84
Transmembrane Helix	129	149	0.91
Non-Cytoplasmic	150	181	0.89
Transmembrane Helix	182	200	0.89
Cytoplasmic	201	213	0.86
Transmembrane Helix	214	234	0.92
Non-Cytoplasmic	235	252	0.84
Transmembrane Helix	253	276	0.86
Cytoplasmic	277	293	0.96