YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109477172, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAARAV PVSSGFRGLP RTLPLVVILG ATGTGKSTLA LQLGQRLGGE IVSADSMQVY  60
   61 EGLDIITNKV SAQEQKMCRH HMISFVDPLV TSYTVVDFRN RATALIEDIF ARDKIPIVVG 120
  121 GTNYYIESLL WKVLVTTKPQ GMGTGKAVDR KVELEKEDGH ELHKRLSQVD PEMAAKLHPH 180
  181 DKRKVARSLQ VFEETGVSHS EFLHRQHAEE GGGPLGGPLK FPNPCILWLH ADQAVLDERL 240
  241 DKRVDDMLAA GLLEELRDFH RRYNLKNVSE DSQDYQHGIF QSIGFKEFHE YLTTEGKCTP 300
  301 ETSNQLLKKG VEALKQVTKR YARKQNRWVR NRFLSRPGPS VPPVYGLEVS DVSKWEEFVL 360
  361 EPALSIVQSF IQGSKPTATP VKIPYSETEN KRSYHMCDLC DRIIIGDREW AAHTKSKSHL 420
  421 HQLKKRRKLD LDAVSALGSQ SNSPDSELER KEGESSGQRD QELKASV

Type	Start	End	Confidence
Signal Peptide	1	40	0.75
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	467	0.99