YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62649310
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVHRRQHA PVKGEAPAKS STHRDEEELG MAPAETLTVF LKLLAAGFYG VSSFLIVVVN  60
   61 KSVLTNYRFP SSLCVGLGQM VATVAVLWVG KALRVVKFPD FDRNVPRKTF PLPLLYFGNQ 120
  121 ITGLFSTKKL NLPMFTVLRR FSILFTMFAE GALLKKTFSW GIKMTVFAMI IGAFIAASSD 180
  181 LAFDLEGYVF ILINDVLTAA NGAYVKQKLD SKELGKYGLL YYNALFMILP TLAIAYFTGD 240
  241 AQKAMEFEGW ADALFLLQFT LSCVMGFILM YATVLCTQYN SALTTTIVGC IKNILITYIG 300
  301 MVFGGDYIFT WTNFIGLNIS IAGSLVYSYI TFTEEQLSKQ SETSNKLDTK GKGAV

Type	Start	End	Confidence
Cytoplasmic	1	38	0.82
Transmembrane Helix	39	59	0.93
Non-Cytoplasmic	60	68	0.67
Transmembrane Helix	69	90	0.88
Cytoplasmic	91	159	0.69
Transmembrane Helix	160	179	0.89
Non-Cytoplasmic	180	186	0.66
Transmembrane Helix	187	205	0.76
Cytoplasmic	206	217	0.79
Transmembrane Helix	218	238	0.93
Non-Cytoplasmic	239	253	0.78
Transmembrane Helix	254	275	0.92
Cytoplasmic	276	281	0.74
Transmembrane Helix	282	302	0.84
Non-Cytoplasmic	303	308	0.62
Transmembrane Helix	309	331	0.84
Cytoplasmic	332	355	0.83