YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62647463, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSWIISRLV VLIFGTLYPA YYSYKAVKSK DIKEYVKWMM YWIIFALFTT AETFTDIFLC  60
   61 WFPFYYELKI AFVAWLLSPY TKGSSLLYRK FVHPTLSSKE KEIDDCLVQA KDRSYDALVH 120
  121 FGKRGLNVAA TAAVMAASKG QGALSERLRS FSMQDLTTIR GDGAPAPSGP PPPGSGRSSG 180
  181 KHGQPKMSRS ASESAGSSGT A

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.70
Transmembrane Helix	5	24	0.78
Cytoplasmic	25	37	0.81
Transmembrane Helix	38	60	0.84
Non-Cytoplasmic	61	69	0.57
Transmembrane Helix	70	86	0.51
Cytoplasmic	87	201	0.66