YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109473624, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWNLTAEQL SALLQLHNLT RAQFIARYGL RPLVLTPQLP ARARLALLLA GLLIFALALF  60
   61 GNALVVYVVT RSKAMRTVTN IFICSLALSD LLIVFFCIPV TMLQNVSDTW LGGAFICKMV 120
  121 PFVQCTAVVT EILTMTCIAV ERHQGLVHPF KMKQQYTNQR AFTMLGVVWL VAIIIGSPMW 180
  181 HVQRLEIKYD FLYEKEHICC LEEWSSPVHQ KIYTTFILVT LFLLPLLLLS VLYGKIGYEL 240
  241 WIKKRVGDGS VLRTIHGKEM FKIARKKKRA VIMMVTVVVL FAVCWAPFHV VHMMIEYSNF 300
  301 EKEYDEVTIK MIFAIVQIIG FFNSICNPIV YALMNENFKK NFVSAVCYCV IKETPSPAQR 360
  361 HGSLGAIVMH RRVKLAVGEN PVEIKGEAFG GSNMDIKWCE QPEKKKKSQM ASCPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.82
Transmembrane Helix	45	69	0.90
Cytoplasmic	70	77	0.89
Transmembrane Helix	78	102	0.88
Non-Cytoplasmic	103	119	0.78
Transmembrane Helix	120	140	0.89
Cytoplasmic	141	160	0.93
Transmembrane Helix	161	182	0.92
Non-Cytoplasmic	183	212	0.98
Transmembrane Helix	213	234	0.94
Cytoplasmic	235	269	0.96
Transmembrane Helix	270	291	0.94
Non-Cytoplasmic	292	310	0.91
Transmembrane Helix	311	333	0.87
Cytoplasmic	334	415	0.96