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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109473228, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAMPWNWTC LLSHLLVVGM GSSTLLPRQP PQMSQKPSFV TFRGEPTEGF NHLVVDERTG  60
   61 HIYLGAVNRI YKLSSDLKVL VTHQTGPDED NPKCYPPRIV QTCNEPLAST NNVNKMLLID 120
  121 YKENRLIACG SLYQGICKLL RLEDLFKLGE PFHKKEHYLS GVNESGSVFG VIVSYSNFDD 180
  181 KLFIATAVDG KPEYFPTISS RKLTKNSEAD GMFAYVFHDE FVASMIKIPS DTFTVIPDFD 240
  241 IYYVYGFSSG NFVYFLTLQP EMVSPPGSTT KEQVYTSKLV RLCKEDTAFN SYVEVPIGCE 300
  301 RSGVEYRLLQ AAYLSKAGAV LGRTLGVRPD DDLLFTVFSK GQKRKMKSLD ESALCVFILK 360
  361 QINDRIKDRL QSCYRGEGTL DLAWLKVKDI PCSSALLTID DNFCGLDMNA PLGVSEMVRG 420
  421 IPVFTEDRDR MTSVIAYVYK NHSLAFVGTK SGKLKKIRVD GPKGNALQYE TVQVVDSGPV 480
  481 LRDMAFSKDH EQLYIMSERQ LTRVPVESCG QYRSCGECLG SGDPHCGWCV LHNTCTRKER 540
  541 CERSREPRRF ASEMKQCVRL TVHPNNISVS QYNVLLVLET YNVPELSAGV NCTFEDLSEM 600
  601 DGLVIGNQIQ CYSPAAKEVP RIITENGDHH VVQLQLKSKE TGMTFASTSF VFYNCSVHNS 660
  661 CLSCVESPYR CHWCKYRHVC THDPKTCSFQ EGRVKLPEDC PQLLRVDKIL VPVEVIKPIT 720
  721 LKAKNLPQPQ SGQRGYECIL NIQGMEQRVP ALRFNSSSVQ CQNTSYSYEG MEINNLPVEL 780
  781 TVVWNGHFNI DNPAQNKVYL YKCGAMRESC GLCLKADPDF ECGWCQSPGQ CTLRQHCPAH 840
  841 ESRWLELSGA NSKCTNPRIT EIIPVTGPRE GGTKVTIRGE NLGLEFRDIA SHVKVAGVEC 900
  901 IPLVDGYIPA EQIVCEMGEA KPSQHAGFVE ICVAVCRPEF MARSSQLYYF MTLTLADLKP 960
  961 NRGPMSGGTQ VTITGTNLNA GSNVVVMFGS QPCLFHRRSP SYIICNTTSS EEVLDMKVTV1020
 1021 QVDRARIRQD LVFQYVEDPT IVRIEPEWSI VSGNTPIAVW GTHLDLIQNP QIRAKHGGKE1080
 1081 HINICEVLNA TEMTCQAPAL ALGPDHQSDL TERPEEFGFI LDNVQSLLIL NKTNFTYYPN1140
 1141 PVFEAFSPSG ILELKPGTPI ILKGKNLIPP VAGGNVKLNY TVLVGEKPCT VTVSDVQLLC1200
 1201 ESPNLIGRHK VMARVGGMEY SPGMVYIAPD SPLSLPAIVS IAVAGGLLII FIVAVLIAYK1260
 1261 RKSRESDLTL KRLQMQMDNL ESRVALECKE AFAELQTDIH ELTSDLDGAG IPFLDYRTYT1320
 1321 MRVLFPGIED HPVLRDLEVP GYRQERVEKG LKLFAQLINN KVFLLSFIRT LESQRSFSMR1380
 1381 DRGNVASLIM TVLQSKLEYA TDVLKQLLAD LIDKNLESKN HPKLLLRRTE SVAEKMLTNW1440
 1441 FTFLLYKFLK ECAGEPLFSL FCAIKQQMEK GPIDAITGEA RYSLSEDKLI RQQIEYKTLV1500
 1501 LSCVSPDNAN SPEVPVKILN CDTITQVKEK ILDAIFKNVP CSHRPKAADM DLEWRQGSGA1560
 1561 RMILQDEDIT TKIENDWKRL NTVAHYQVPD GSLVALVSKQ VTAYNAVNNS TVSRTSASKY1620
 1621 ENMIRYTGSP DSLRSRTPMI TPDLESGVKL WHLVKNHEHG DQKEGDRGSK MVSEIYLTRL1680
 1681 LATKGTLQKF VDDLFETIFS TAHRGSALPL AIKYMFDFLD EQADKHGIHD PHVRHTWKSN1740
 1741 CLPLRFWVNM IKNPQFVFDI HKNSITDACL SVVAQTFMDS CSTSEHRLGK DSPSNKLLYA1800
 1801 KDIPSYKNWV ERYYSDIGKM PAISDQDMNA YLAEQSRMHM NEFNTMSALS EIFSYVGKYS1860
 1861 EEILGPLDHD DQCGKQKLAY KLEQVITLMS LDS

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