YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149029042, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESISMMGSP KTLETFLPNG INGIKDARKV TVGVIGSGDF AKSLTIRLIR CGYHVVIGSR  60
   61 NPKFASEFFP HVVDVTHHED ALTKTNIIFV AIHREHYTSL WDLRHLLVGK VLIDVSNNMR 120
  121 VNQYPESNAE YLASLFPDSL IVKGFNVISA WALQLGPKDA SRQVYICSNN IQARQQVIEL 180
  181 ARQLNFIPVD LGSLSSAKEI ENLPLRLFTL WRGPVVVAIS LATFFFIYSF VRDVIHPYAR 240
  241 NQQSDFYKIP IEIVNKTLPI VAITLLSLVY LAGLLAAAYQ LYYGTKYRRF PPWLDTWLQC 300
  301 RKQLGLLSFF FAVVHVAYSL CLPMRRSERY LFLNMAYQQV HANIENAWNE EEVWRIEMYI 360
  361 SFGIMSLGLL SLLAVTSIPS VSNALNWREF SFIQSTLGYV ALLITTFHVL IYGWKRAFAE 420
  421 EYYRFYTPPN FVLALVLPSI VLLGKMMLLL PCIGRKLKRI KKGWEKSQFL EEGMGGTVPH 480
  481 LSPERVTVM

Type	Start	End	Confidence
Cytoplasmic	1	207	0.96
Transmembrane Helix	208	230	0.90
Non-Cytoplasmic	231	259	0.93
Transmembrane Helix	260	283	0.93
Cytoplasmic	284	303	0.92
Transmembrane Helix	304	322	0.96
Non-Cytoplasmic	323	357	0.91
Transmembrane Helix	358	381	0.86
Cytoplasmic	382	391	0.79
Transmembrane Helix	392	412	0.92
Non-Cytoplasmic	413	430	0.89
Transmembrane Helix	431	453	0.91
Cytoplasmic	454	489	0.97