YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62646208, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAGLIAFEK ASEGWSPTYA LLRLRKTARG VTPTSGRKRE AGGAGRLVSP FRPVPMEALG  60
   61 KLKQFDAYPK TLEDFRVKTC GGATVTIVSG LLMLLLFLSE LQYYLTTEVH PELYVDKSRG 120
  121 DKLKINIDVL FPHMPCAYLS IDAMDVAGEQ QLDVEHNLFK KRLDKDGIPV SSEAERHELG 180
  181 KVEVTVFDPD SLDPNRCESC YGAESEDIKC CNSCEDVREA YRRRGWAFKN PDTIEQCRRE 240
  241 GFSQKMQEQK NEGCQVYGFL EVNKVAGNFH FAPGKSFQQS HVHVHAVEIH DLQSFGLDNI 300
  301 NMTHYIKHLS FGEDYPGIVN PLDHTNVTAP QASMMFQYFV KVVPTVYMKV DGEVLRTNQF 360
  361 SVTRHEKVAN GLLGDQGLPG VFVLYELSPM MVKLTEKHRS FTHFLTGVCA IIGGMFTVAG 420
  421 LIDSLIYHSA RAIQKKIDLG KTT

Type	Start	End	Confidence
Cytoplasmic	1	78	0.71
Transmembrane Helix	79	98	0.61
Non-Cytoplasmic	99	402	0.90
Transmembrane Helix	403	427	0.85
Cytoplasmic	428	443	0.82