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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PCAT1_RAT
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRGRGPRA APSSSSGAGD ARRLAPPGRN PFVHELRLSA LQKAQVAFMT LTLFPIRLLF  60
   61 AAFMMLLAWP FALVASLGPP DKEPEQPLAL WRKVVDFLLK AIMRTMWFAG GFHRVAVKGR 120
  121 QALPTEAAIL TLAPHSSYFD AIPVTMTMSS IVMKAESRDI PIWGTLIRYI RPVFVSRSDQ 180
  181 DSRRKTVEEI KRRAQSNGKW PQIMIFPEGT CTNRTCLITF KPGAFIPGVP VQPVVLRYPN 240
  241 KLDTITWTWQ GPGALKILWL TLCQFQNQVE IEFLPVYCPS EEEKRNPALY ASNVRRVMAK 300
  301 ALGVSVTDYT FEDCQLALAE GQLRLPADTC LLEFARLVRG LGLKPENLEK DLDKYSESAR 360
  361 MKRGEKIRLP EFAAYLEVPV SDALEDMFSL FDESGGGEID LREYVVALSV VCRPSQTLAT 420
  421 IQLAFKMYGS PEDGSIDEAD LSCILKTALG ISELTVTDLF QAIDQEERGR ITFDDFCGFA 480
  481 EMYPDFAEDY LYPDQTHSDS CAQTPPAPTP NGFCIDFSPE HSDFGRKNSC KKVD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle