YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLSIKDDE YKPPKFNLFG KISGWFRSIL SDKTSRNLFF FLCLNLSFAF VELLYGIWSN  60
   61 CLGLISDSFH MFFDSTAILA GLAASVISKW RDNDAFSYGY VRAEVLAGFV NGLFLIFTAF 120
  121 FIFSEGVERA LAPPDVHHER LLLVSILGFV VNLVGIFVFN HGGHGHSHGS GHGHSHSLFN 180
  181 GALDHSHGHE DHCHSHGAKH GGAHSHDHDH AHGHGHLHSH DGPSFKETAG PSRQILQGVF 240
  241 LHILADTLGS IGVIASAIMM QNFGLMIADP ICSILIAILI VVSVIPLLRE SIGILMQRTP 300
  301 PSLENVLPQC YQRVQQLQGV YNLQEQHFWT LCSDVYVGTL KLVVAPDADA RWILSQTHNI 360
  361 FTQAGVRQLY VQIDFAAM

Type	Start	End	Confidence
Cytoplasmic	1	36	0.98
Transmembrane Helix	37	58	0.93
Non-Cytoplasmic	59	68	0.85
Transmembrane Helix	69	88	0.92
Cytoplasmic	89	99	0.83
Transmembrane Helix	100	123	0.86
Non-Cytoplasmic	124	140	0.89
Transmembrane Helix	141	162	0.92
Cytoplasmic	163	237	0.97
Transmembrane Helix	238	259	0.93
Non-Cytoplasmic	260	265	0.83
Transmembrane Helix	266	288	0.93
Cytoplasmic	289	378	0.98