YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62642325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIPSPVTST PFSVKDILNL EQQRHFHGAH LQAELEQHLH SAPCMLAAAE GTQFSDAGEE  60
   61 DEEEEGEKLS YLNSLAAAEG HGVSGLCPQS YVHTVLRDSC SGPKEQEEEV VSERSQKSCQ 120
  121 LKKSLEAAGD CKASEDGERP KPRSRRKPRV LFSQAQVFEL ERRFKQQRYL SAPEREHLAS 180
  181 SLKLTSTQVK IWFQNRRYKC KRQRQDKSLE LGTHAPPPPP RRVAVPVLVR DGKPCVTPSA 240
  241 QAYGSPYGVG AGAYSYNSFP AYGYGNSAAA AAAAAAAAAA AAAYSGSYGC AYPTGGGGGG 300
  301 GGAASAATTA MQPACSATGG GSFVNVGNLG GFGSGGGAQP LHQGAAAGAA CAQGTLQGIR 360
  361 AW

Type	Start	End	Confidence
Cytoplasmic	1	261	0.53
Transmembrane Helix	262	284	0.57
Non-Cytoplasmic	285	362	0.53