YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62642238
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.97
Transmembrane Helix	73	92	0.93
Non-Cytoplasmic	93	102	0.75
Transmembrane Helix	103	121	0.95
Cytoplasmic	122	134	0.86
Transmembrane Helix	135	154	0.96
Non-Cytoplasmic	155	161	0.77
Transmembrane Helix	162	181	0.96
Cytoplasmic	182	189	0.81
Transmembrane Helix	190	209	0.95
Non-Cytoplasmic	210	226	0.88
Transmembrane Helix	227	245	0.95
Cytoplasmic	246	256	0.82
Transmembrane Helix	257	277	0.95
Non-Cytoplasmic	278	288	0.76
Transmembrane Helix	289	306	0.97
Cytoplasmic	307	316	0.75
Transmembrane Helix	317	336	0.94
Non-Cytoplasmic	337	341	0.87
Transmembrane Helix	342	364	0.88
Cytoplasmic	365	367	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPPESAAEL SPEAVELREP ELQLADPASP GEEHVDVEAE GAPGRGRCWP CRAWACGSRG  60
   61 EPEAKKTAPC PGLGLFYTVL SAFLFSVVSL LVKKVQGVHA VEISAFRCVV QMLVIIPCLI 120
  121 YRKTGFIGPK GQRLFLFLRG VFGSSAMILM YYAFQTTSLA DATVIAFSCP VFTSIFAWIF 180
  181 LKEKYSLWDA FFTLFAIAGV ILIVRPTFLF GSNTSGMRES YSEHIKGTFA AIGHAVLAAM 240
  241 TLVILRKMGK SVDYFLSIWY YVILGLPETI VVLFVIGEWS LPYCGRDRLF LILIGLVGLG 300
  301 AQIFITKALQ IEKAGLVAIM KTMDVVFAFI FQIAFFDNVP TWWTVGGALC VVVSTTGATI 360
  361 RRWLQSK