YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRI72_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAPGLLRQ ELSCPLCLQL FDAPVTAECG HSFCRACLIR VAGEPADDGT VACPCCQAST  60
   61 RPQALSTNLQ LARLVEGLAQ VPQGHCEEHL DPLSIYCEQD RTLVCGVCAS LGSHRGHRLL 120
  121 PAAEAHARLK TQLPQQKAQL QEACMRKEKS VAVLEHQLVE VEETVRQFRG AVGEQLGKMR 180
  181 MFLAALESSL DREAERVRGE AGVALRRELS SLNSYLEQLR QMEKVLEEVA DKPQTEFLMK 240
  241 FCLVTSRLQK ILSESPPPAR LDIQLPVISD DFKFQVWKKM FRALMPELEE LTFDPSSAHP 300
  301 SLVVSASGRR VECSEQKAPP AGEDTCQFDK TVAVVAKQLL SQGEHYWEVE VGDKPRWALG 360
  361 VMAADASRRG RLHAVPSQGL WLLGLRDGKI LEAHVEAKEP RALRTPERPP ARIGLYLSFA 420
  421 DGVLTFYDAS NTDALTPLFS FHERLPGPVY PMFDVCWHDK GKNSQPLLLV GPDSEQA

Type	Start	End	Confidence
Signal Peptide	1	27	0.77
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	477	0.99