YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62641297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKGGNQEAV IEGSGGELGG PGSWGLQDAA GLLARASLPI MFPWPLPLGS SVLTVLLGAL  60
   61 TSLFLWYCYR LGSQDMQALG IGSRAGGVSG MPDVCSQTGS RGSGDPGEGH RAEGLVSRRL 120
  121 RAYARRYSWA GMGRVRRAAQ GGPGLTGGTG ILGIQRPGLL FLPDLPSSPF VPRDAQRHDV 180
  181 ELLQSSFPAI LRDFGAVSWD FSGSTPLPRG WSPPLAPGCY QLLLYQAGRC QPSNCRRCPG 240
  241 AYRALRGLRS FMSANTFGNA GFSVLLPGAR LEGRCGPTNA RVRCHLGLKI PPGCELVVGG 300
  301 EPQCWAEGHC LLVDDSFLHT VAHNGSPEDG PRVVFIVDLW HPNVAGAERQ ALDFVFAPDP 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.56
Transmembrane Helix	46	69	0.87
Cytoplasmic	70	138	0.70
Transmembrane Helix	139	154	0.45
Non-Cytoplasmic	155	360	0.74