YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62640940, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKWVLEAS DLAPPHVEVG RASSSVPQPT PLAPASLTPP ANNNLPHLPG FPSQAGELQN  60
   61 LSRPSGWARR ACPGSGGWDY EGGGTARRSG GRGLPLGRFS DGSSPAPALW VREEGAGERA 120
  121 LPEPARERPS RVWGVGAMAP AVDRKGYWGP TTSTLDWCEE NYVVTLFVAE FWNTVSNLIM 180
  181 IIPPIFGAIQ GFRDRLEKRY IAAYVALTVV GMGSWCFHMT LKYEMQLLDE LPMIYSCCIF 240
  241 VYCMFECFKT KSSINYHLLF TLVLFSLIVT TIYLKVKEPI FHQVMYGMLV FALVLRSIYI 300
  301 VTWVYPWLRG LGYTSLTVFL LGFLLWNVDN IFCDSLRNFR KTVPPVLGVA TQFHAWWHIL 360
  361 TGLGSYLHIL FSLYTRTLYL RYRPKVKFLF GIWPMVMFEP QRKH

Type	Start	End	Confidence
Cytoplasmic	1	199	0.57
Transmembrane Helix	200	221	0.92
Non-Cytoplasmic	222	230	0.70
Transmembrane Helix	231	248	0.86
Cytoplasmic	249	253	0.86
Transmembrane Helix	254	274	0.92
Non-Cytoplasmic	275	279	0.80
Transmembrane Helix	280	300	0.89
Cytoplasmic	301	309	0.63
Transmembrane Helix	310	328	0.90
Non-Cytoplasmic	329	353	0.91
Transmembrane Helix	354	375	0.91
Cytoplasmic	376	404	0.89