YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TTYH1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPPGYRPS AWVHLLHQLP RADFQLRPVP SGFAPRDQEY QQALLLVAAL AGLGLGLSLI  60
   61 FIAVYLIRFC CCRPPEPPGA KSPPPGGGCV TWSCIAALLV GCAGIGIGFY GNSETSDGVS 120
  121 QLSSALQHAN HTLSTIDDLV LETVERLGEA VRTELTTLEE VLSERVELVA ATRGARRQAE 180
  181 AAAQHLQGLA FWQGVSLSPV QVAEDVTFVE EYRWLAYVLL LLLVLLVCLF TLLGLAKQSK 240
  241 WLVVVMTAMS LLVLVLSWGS MGLEAATAVG LSDFCSNPDT YVLNLTQEET GISSDILNYY 300
  301 FLCNQAVSNP FQQRLTLSQR ALASIHSQLQ GLEREASPQF PAAQKPLLSL EETLNVTERS 360
  361 FHQLVALLHC RSLHKDYGSA LRGLCEDALE GLLFLMLFSL LSAGALATTL CSLPRAWALF 420
  421 PPSDDYDDTD DDDPFNPQES KRFVQWQSSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.71
Transmembrane Helix	43	67	0.90
Cytoplasmic	68	87	0.65
Transmembrane Helix	88	110	0.92
Non-Cytoplasmic	111	213	0.71
Transmembrane Helix	214	235	0.93
Cytoplasmic	236	240	0.75
Transmembrane Helix	241	262	0.89
Non-Cytoplasmic	263	390	0.77
Transmembrane Helix	391	413	0.83
Cytoplasmic	414	450	0.72