YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	casy-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPRPKALL SHHGYDVGQG AIAGGAVAVV VVVCVGFLLV LLVIGVLKMR DTPMPRRRRQ  60
   61 KRQSDGGMHW DDSGMNITVN PLDDVEKNGG AIDEFSDEEE EEETDGESEC SYRDEEDDVS 120
  121 EDEEDQTEVL PHLDANQRVV GGLEWDDEDA ISTNARSYRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	47	0.91
Cytoplasmic	48	160	0.96