YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39564
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERKTTSAQ TIVIISSLIL LIVALGLQAG GVMSPSWQVV DIREFRATHH HGLWLDCTRP  60
   61 QLHLVKSQNK DDLPLHCTYK FDISATQIID ENIEDIDQNS AAGESEHHQF FGWHKFTLGF 120
  121 MLCAIVLAAL SLLCGICAPC SSGFAVLYAI LVAFTAFTAT CGDAIFFFAA HRVDSRFVQG 180
  181 LVGTYEQVIG MAFYLHVAGT AISCLALIMA AISAYSLLQN NESDRHLPMR EMAPLHEPRF 240
  241 ARV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.84
Transmembrane Helix	11	30	0.93
Non-Cytoplasmic	31	115	0.97
Transmembrane Helix	116	137	0.93
Cytoplasmic	138	145	0.76
Transmembrane Helix	146	170	0.89
Non-Cytoplasmic	171	191	0.94
Transmembrane Helix	192	217	0.85
Cytoplasmic	218	243	0.96