YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71892222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEINTLQIIL LFITSCVIGM GSILDEFQCH RPLIACTLTG LILGDIKTGI IIGGTLEMIA  60
   61 LGWMNIGAAV APDTALASII STILVIMGQQ PIGAGIALAI PLAATGQVLT IIVRTITVAF 120
  121 QHAADKAAEH CNMKILSWIH ITALMLQAMR VSIPATIVGV SVGTETVHSM LHAIPEVITN 180
  181 GLNIAGGIIV VVGYAMVINM MRTGYLMPFF YLGFVITAFT DFNLVALGII GIILAILYIQ 240
  241 LSPRYNQVKN QNLSKQTVQS ASNLDDELD

Type	Start	End	Confidence
Cytoplasmic	1	5	0.62
Transmembrane Helix	6	24	0.89
Non-Cytoplasmic	25	32	0.46
Transmembrane Helix	33	54	0.74
Cytoplasmic	55	60	0.52
Transmembrane Helix	61	86	0.75
Non-Cytoplasmic	87	93	0.58
Transmembrane Helix	94	118	0.83
Cytoplasmic	119	135	0.74
Transmembrane Helix	136	160	0.71
Non-Cytoplasmic	161	176	0.59
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	208	0.54
Transmembrane Helix	209	239	0.81
Non-Cytoplasmic	240	269	0.66