YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125841746, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	29	0.92
Non-Cytoplasmic	30	49	0.85
Transmembrane Helix	50	68	0.67
Cytoplasmic	69	81	0.58
Transmembrane Helix	82	100	0.94
Non-Cytoplasmic	101	173	0.71
Transmembrane Helix	174	194	0.95
Cytoplasmic	195	204	0.89
Transmembrane Helix	205	227	0.89
Non-Cytoplasmic	228	235	0.75
Transmembrane Helix	236	256	0.88
Cytoplasmic	257	767	0.98
Transmembrane Helix	768	790	0.88
Non-Cytoplasmic	791	804	0.50
Transmembrane Helix	805	823	0.64
Cytoplasmic	824	840	0.65
Transmembrane Helix	841	863	0.83
Non-Cytoplasmic	864	877	0.73
Transmembrane Helix	878	898	0.95
Cytoplasmic	899	915	0.74
Transmembrane Helix	916	938	0.84
Non-Cytoplasmic	939	944	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHRETSPRL FLTFQCLVLL VIVVHNVHHV TAEHAPDHSQ DHSSPANKSL SCGGGSAICA  60
   61 PGVILPVWEP PNPSFGDKVA RATVYFVALV YMFLGVSIIA DRFMASIEVI TSQEKEITIK 120
  121 KPNGETTTTT VRIWNETVSN LTLMALGSSA PEILLSVIEV CGHNFEAGDL GPSTIVGSAA 180
  181 FNMFVIIGIC VYVVPDGEHR KVKHLRVFFV TAAWSIFAYL WMYLILAVLS PGIVQVWEGL 240
  241 LTLFFFPICV VFAWIADRRL LFYKYVYKRY RAGKHRGMII ETEGDRPLPS KVDIEMDGKM 300
  301 LNSHAVDFLD GTLALELEDK DLDEDEARRE MAKILKELKQ KHPDKEVEQL IELANYQVLS 360
  361 QQQKSRAFYR CQATRLMTGA GNILKKHAAD QARKAVSMHE VRSDTGENDP ISKIFFDPCS 420
  421 YQCLENCGTV AVNVIRRGGD LNQTVSVEFR TEDGTANAGS DYEFTEGTVV FKPGETQKEI 480
  481 RVGIIDDDIF EEDENFLIHL SNVRVVHEGD EPETTEANHV ETIATLGLPS TATVTIFDDD 540
  541 HAGIFTFEEP VTHVSESVGV MEVKVLRTSG ARGVVSVPYK TIEGTARGGG EDFEDSHGFL 600
  601 EFQNDEILKT ITVRVLNREE YHKQCSFFIE LQTPLWRRRG WTVYRDEEKE VVKEEEEPLT 660
  661 GEEEEERRIA EMGKPMLGDH PRVEVIIEES YEFKNTVDKL IKKTNLALLV GTNSWRDQFI 720
  721 EAITVSAGED DDDEECGEEK LPSCFDYVMH FLTVFWKVLF AFVPPTDYWN GWACFVVSII 780
  781 MIGVLTAFIG DLASHFGCTI GLKDSVTAVV FVALGTSVPD TFASKVAAIQ DQYADASIGN 840
  841 VTGSNAVNVF LGIGVAWSIA AIYHNSKGND FRVEPGNLAF SVTLFTIFAF ICVAVLMYRR 900
  901 RPDIGGELGG PRTAKALTTM LFVSLWLLYI LFSSLEAYCH IKGF