YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82616288
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTREFIMLMV PPLTDGFPLD ILVANVVACF LLGTVTALYA RKIHSRDVHT IIGTGMMGGV  60
   61 STFSSFAYGS VVLASASMSA FLIAAAYVTV SVVAGYVAVL AGMKFGEKSA DILHRYPPMA 120
  121 SIIDSGLVTV ESRHSVAETI ERVAAKAKSM GMNVFTRVDH GAGAKEAGLG LPPTELIIFG 180
  181 NPQNGTVLMQ DKRTIGLDLP IRALAWEDGS GKVWLTVNDP AWLAQRHSLG LSSDVAIKAM 240
  241 VTGTGTVTKY AAGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.87
Transmembrane Helix	21	40	0.95
Cytoplasmic	41	49	0.85
Transmembrane Helix	50	71	0.91
Non-Cytoplasmic	72	79	0.72
Transmembrane Helix	80	100	0.93
Cytoplasmic	101	254	0.95