YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82699601
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVESFSGAS VRRQAGFWLG AMAFFVLFLV VFSSVLLPFV AGMALAYFLD PVADRLEKVG  60
   61 LSRLAASIVI LLIFLMILII GLMIVVPILA TQLADFISNL PGYITQLQSL LANRDSEWLK 120
  121 KYIGIDSTVI QQNLSSLLQQ GAGFLSTLLQ SLWNSGKSLI DIAGLFVVTP VVAFYMLLDW 180
  181 DRMVNSIDSW VPRKQLHTVR RIAREMNAAV AGFIRGQGTL CLILGTYYAI GLTLTGLNFG 240
  241 LLIGFFAGLI SFIPYIGSFV GLALAIGVAL VQFWPDWIMV CTVAAVFFLG QFIEGNILQP 300
  301 KLVGSSVGLH PVWLMFALFA FGSLFGFTGM LVAVPAAAAV GVLVRFALNS YLRSPMYDPA 360
  361 NNRSNPDAGP LIEAGDNTGR EKWDGAKIRW DLMGAAMHDA PRQIPLNLEH QPGYNREDLI 420
  421 VTASNRAAVD LIDRWPNWLS PVTILAGPTG AGKTHLAEIW RSGTDALLVD PSNITEEAVN 480
  481 SAAERPVLID NIGAEAFDET GLFHLINSVR QHAAQGPGPS LLMTSRLWPA NWNVKLPDLA 540
  541 SRLKAATVVE IAEPDDMLLS GVIHKLFADR QVSVEPHVVS YLVSRMERSL LSAIQIVDRL 600
  601 DRAALEQKSR ITRALAAQIL ADMGQAG

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.62
Transmembrane Helix	17	49	0.80
Cytoplasmic	50	63	0.62
Transmembrane Helix	64	90	0.85
Non-Cytoplasmic	91	157	0.64
Transmembrane Helix	158	178	0.89
Cytoplasmic	179	210	0.71
Transmembrane Helix	211	231	0.83
Non-Cytoplasmic	232	240	0.52
Transmembrane Helix	241	266	0.83
Cytoplasmic	267	272	0.51
Transmembrane Helix	273	293	0.86
Non-Cytoplasmic	294	312	0.63
Transmembrane Helix	313	346	0.82
Cytoplasmic	347	627	0.83