YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83648930, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	49	0.92
Transmembrane Helix	50	71	0.92
Cytoplasmic	72	88	0.92
Transmembrane Helix	89	111	0.93
Non-Cytoplasmic	112	143	0.95
Transmembrane Helix	144	166	0.88
Cytoplasmic	167	186	0.90
Transmembrane Helix	187	208	0.90
Non-Cytoplasmic	209	225	0.86
Transmembrane Helix	226	249	0.87
Cytoplasmic	250	260	0.88
Transmembrane Helix	261	283	0.90
Non-Cytoplasmic	284	314	0.93
Transmembrane Helix	315	336	0.86
Cytoplasmic	337	344	0.87
Transmembrane Helix	345	364	0.92
Non-Cytoplasmic	365	400	0.86
Transmembrane Helix	401	421	0.90
Cytoplasmic	422	444	0.85
Transmembrane Helix	445	464	0.94
Non-Cytoplasmic	465	471	0.67
Transmembrane Helix	472	490	0.96
Cytoplasmic	491	657	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSPKARLN PPVFFTSSGL IVLLVAFAAL FPEKASELFT ELQAAIVANA SWFYVLTVAI  60
   61 ILITVCFLGL SRYGEIKLGP DHSTPDYSYI TWFAMLFSAG MGIGLMFFGV AEPVMHFLSP 120
  121 PVGDGGTVQA AREAMKITFF HWGLHAWAIY AIVALILAFF SYRHGLPLTL RSALYPLIGE 180
  181 KIYGPIGHAV DIFAVIGTLF GVATSLGYGV LQVNSGLNHL FDIPVGLTTQ VVLIVFVTFL 240
  241 AILSVTTGLD KGIRRLSELN MALAVLLLAF VLLAGPTVFL LQAFVQNLGS YASDIVRNTF 300
  301 NLFAYEKTDW IGGWTILYWG WWMSWAPFVG LFIARVSRGR TIREFAMGVL FVPTGFTLMW 360
  361 MTFFGNTAIN MILNDGLTSL GDTVSSDVTI ALFAFLEQFP FSGILSLLAT VMVIVFFVTS 420
  421 SDSGSMVVDM LCSNGRDDTP VWQRVYWAGG EGVVAAVLLA AGGLGALQTM TIASALPFAV 480
  481 VLLIATYGLI KALRIDAFKR DSLQLNVQPA APMVHDENWR DRLSNIVDYP DKENVNRFLG 540
  541 SIAKPACESV CKELREHELD AHVEEDRERH RVRLTVLLGN EVDFVYEVRS RSHVKPNFIQ 600
  601 PEESIEDAPE EVRYYRAEVH LREGGQDYDV MGWSKVAVIN DIIDQYHKHM HFLHLLR