YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83647943, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAAQKHST FVWEGTDRKG NKTKGETSGS NVALVKAQLR KQGINPTRVK KKAESILGKR  60
   61 TKKITPFDIA VFTRQMATMM KAGVPLVQSF DIVADGLEHP SLKELVLDIK NEVAAGNSFA 120
  121 GALKKHPKYF DDLFCNLIDS GEKSGALETM LARVATYLEK TEILKKKVKK AMTYPIAVLV 180
  181 VAVIVTGILL VKVVPQFQDL FQGFGADLPA FTQMIINISE YLQASWYIIL GVIIAAIFSF 240
  241 SEARRRSPAF SDAVDKYILK FPIMGDILHK SAVARFARVL STTFAAGVPL VDALESVAGA 300
  301 TGNAVFRKAV IKIRDDVSSG TQLQYSMKTT GVFPVMAIQL TSIGEESGAL DDMLEKVADH 360
  361 YEAEVDDAVD NLTALMEPMI MAVLGVLVGG LIIGMYLPIF QLGSVV

Type	Start	End	Confidence
Cytoplasmic	1	172	0.99
Transmembrane Helix	173	194	0.93
Non-Cytoplasmic	195	221	0.93
Transmembrane Helix	222	241	0.93
Cytoplasmic	242	379	0.89
Transmembrane Helix	380	400	0.94
Non-Cytoplasmic	401	406	0.72