YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83647647, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYSTPAEKT RAAHRVTLIG MILDIALGLL KIIVGVLAQS HALVADGIHS FTDAGTDILV  60
   61 IVITRYSHQK PDREHPYGHG KFETLGTVVL GSMLIAVAGA MAYDSILRLW EKDAQVAPGW 120
  121 PALLAASLSI AGKEWIYRYT LDIGKKLRSD LIIANAWHSR SDALSSVVVL IALLGVIAGF 180
  181 PWVDALAAII VAILIGKIGI ELAGKSVKEL VETALPEDQV HAIRELALSV EGVRGVHDLR 240
  241 GRYVGPDIVI DLHLQVDSSL SVSEGHYIGV HVARKIRAKF EHISDITYHI DTENDANGKK 300
  301 RAGSPLLPLR QDVTETLQRR WRGLTPEGSI KRLILHYING QVHVEVMIAG NECRLSQEIV 360
  361 KSMRESTADL TWLGDIKVWR EAP

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	38	0.87
Non-Cytoplasmic	39	46	0.71
Transmembrane Helix	47	67	0.68
Cytoplasmic	68	83	0.70
Transmembrane Helix	84	103	0.93
Non-Cytoplasmic	104	116	0.64
Transmembrane Helix	117	137	0.80
Cytoplasmic	138	157	0.77
Transmembrane Helix	158	180	0.78
Non-Cytoplasmic	181	181	0.52
Transmembrane Helix	182	200	0.77
Cytoplasmic	201	383	0.82