YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83635436, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFASLGLSA PILDAISEQG YASPSPIQLQ AIPVVLEGKD VMAAAQTGTG KTAAFTLPIL  60
   61 ERLSKGDRAR SNQARALILT PTRELAAQVG ECVSIYSSKL PLRSTVVFGG VKINPQMMRL 120
  121 RRGVDVIVAT PGRLLDLYNQ NAVRFQDLEV LVLDEADRML DMGFIHDIRK ILDILPKRRQ 180
  181 NLMFSATFSN DIRKLAKELV NNPVEISVSP PNTTAKTVKQ WIHPVDKKQK SALLTQLIRD 240
  241 NNWDQALVFS RTKHGANRLT RQLCAKGINA AAIHGDKSQN ARTKALADFK TGSVQILVAT 300
  301 DIAARGIDID QLPQVVNFDL PQVAEDYVHR IGRTGRAGAE GQAVSLVSAD EFKLLADIER 360
  361 LIQKRLPREE IEGFEPEQRL PESRLPTQPV KARKPKKPKA AKSGEQREQD RKGEKKGPRQ 420
  421 DGAARNNANA PRRQRRRGTG AGRPAPRKEA KSN

Type	Start	End	Confidence
Signal Peptide	1	17	0.72
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	453	0.99