YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83633661, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPPLVEPA AELSAAEIAR YSRHLLLPDV GLEGQKRLKN AKVLAVGAGG LGSPVLLYLA  60
   61 AAGVGTLGVV EFDVVDASNL QRQIIHGVSD VGRPKGESAR DAIREINPHV EVRLHSERLD 120
  121 ADNALSLFAQ YDLIVDGTDN FATRYLVNDA CVLAGKPYVW GSIYRFEGQA SVFWENAPGD 180
  181 AGLNYRDLYP EPPPPHLAPS CSEGGVLGIL CASIGSIMAT EAVKLITGLG ESLLGRLAVY 240
  241 DALEMNYRFI TLRRDPQRTP ITELADYEFF CGLTATTQDS APSVPSIDAH ELKQWRDNAK 300
  301 DFQLIDVRET TEWDIVRIAG ARHIPQSRLL DEEILVTLNR DAPIVLHCKS GARSQRALQS 360
  361 LRERGFDNVH NLDGGILAWI RDVDSSLPSY

Type	Start	End	Confidence
Cytoplasmic	1	42	0.70
Transmembrane Helix	43	62	0.64
Non-Cytoplasmic	63	390	0.92