YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCIB_HAHCH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLFDFFPI ILFFVVYKTT NDIVTATAAL IPATAAQVAF SWFKYRKVEK MHLFALVIVV  60
   61 ILGGATILFK DDTFIKWKPS VVCWLLAVVF LIGGWVSKKN LYQRMMEANI SLPQHAWSKL 120
  121 NYSWVIFNTL LGALNLYVAY HYTQEQWVNF KLFGMLGLSL VFALMQGVYI SRHMVEDEPA 180
  181 PSESATGNGD NKSF

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.67
Transmembrane Helix	21	43	0.70
Cytoplasmic	44	50	0.89
Transmembrane Helix	51	69	0.96
Non-Cytoplasmic	70	76	0.80
Transmembrane Helix	77	97	0.89
Cytoplasmic	98	119	0.87
Transmembrane Helix	120	141	0.91
Non-Cytoplasmic	142	149	0.77
Transmembrane Helix	150	170	0.91
Cytoplasmic	171	194	0.94