YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83644715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSYQEIVR DGLWKNNPAL VQLLGLCPLL AVTGTVVNAI GLGLATTLVL TGSNAAVSMI  60
   61 RNYVPESVRL PAFVMIIASF VTCAELLMQA FAYELYEILG IFIPLIVTNC AILGRADAFA 120
  121 SKNPILPSML DGFMMGLGFS LVLIVLGGMR EIIGQGSLFS GMDLLFGESA RSWKLELFAD 180
  181 YSDFLFAVLP PGAFVGMGLL IALKNVIDKR MKEAAAAKLE KPVSGGKRVR VTGKIS

Type	Start	End	Confidence
Cytoplasmic	1	17	0.60
Transmembrane Helix	18	37	0.75
Non-Cytoplasmic	38	38	0.49
Transmembrane Helix	39	60	0.77
Cytoplasmic	61	69	0.75
Transmembrane Helix	70	91	0.89
Non-Cytoplasmic	92	97	0.73
Transmembrane Helix	98	119	0.88
Cytoplasmic	120	129	0.87
Transmembrane Helix	130	153	0.85
Non-Cytoplasmic	154	183	0.94
Transmembrane Helix	184	203	0.93
Cytoplasmic	204	236	0.94