YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83643766, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKSMQQVT ILGFDYAVSS AITGVVDLLA MAGVTWNHIQ RSQPHPKFNI RVATRDSQPV  60
   61 RCHNRLLIQA DACFDAIEPS DILVIPSIAG DIEKTLAQNP QLIDVLKNMN SQGTVIAGNC 120
  121 TGAFFMAEAG ILDNRTATTH WAFVDMFRQR YPKVDLRPEQ MLTASENVFC SGGGIAWLDL 180
  181 CLYLIEHFCG HEVAVQTAKT FVIDMGRTYQ SSYSSMRARK YHRDEDVLRV QNWLETHCGQ 240
  241 DVRIDDLAVR FNMSPRTLAR RFKAATGDTP LGYLQTLRLE QAKKLLEETS DNVSQITLAV 300
  301 GYEDVSSFTK LFRQKTGLTP KEYRNKFQRR SIT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.77
Transmembrane Helix	12	36	0.76
Non-Cytoplasmic	37	333	0.92