YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83642924, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSSRPSAW TLFRHNHIAF FGLCLFLFVA VIALAAPLLP LSAPNDTAPA ERLLRPLSEG  60
   61 HLLGTDHLGR DLLSRLIWGA RVSIAVGLSA TLIASVIGSA LGLVAGFAGG RTDNVLMRGV 120
  121 DMLMAFPYIL LALAIVAALG PGLSNALYAI ALVNIPFFAR NIRGVALSLT RRDFVDAARL 180
  181 SGKGPVRILL TEILPNVAPV IVITMSTTLG WMILETAGLS FLGLGAQPPQ ADLGSMLGEG 240
  241 RKLLFTAPHV SVIPGLMIFA LVMSVNLIGD GVRDVLDPKL KSGSLTRPAA MTEIQRAPNQ 300
  301 ISSDTKSQNA LAVCNLYTEF QVGTDIYKAV NGVSFELGKG ECLGLVGESG SGKSVTAMSL 360
  361 LRLAPTPPGR IVGGQVWRSG EDLLSFPLHR IQALRGGKIA YIFQDPLSSL HPLFSVGAQV 420
  421 AEAIQAHQPY SHAEAWRAAV TLLEQVRLPN AASKAHSYPH ELSGGMRQRV CIAMALANHP 480
  481 HIIVADEPTT ALDVTVQAQV LKLMNQQRTQ SGAALLFITH DFGVVSEICD RVAVMYAGRI 540
  541 VEVGAAWEVL NRPAHPYTRL LIDCVPIPGR GQHRLPAIPG SPPALNNLPV GCAFAERCPF 600
  601 EEDDCRNNDI GLRSLGDHRF ARCIKPLWKA DP

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	39	0.89
Non-Cytoplasmic	40	83	0.93
Transmembrane Helix	84	108	0.89
Cytoplasmic	109	119	0.81
Transmembrane Helix	120	140	0.84
Non-Cytoplasmic	141	145	0.54
Transmembrane Helix	146	164	0.66
Cytoplasmic	165	187	0.58
Transmembrane Helix	188	205	0.58
Non-Cytoplasmic	206	206	0.16
Transmembrane Helix	207	226	0.60
Cytoplasmic	227	242	0.43
Transmembrane Helix	243	268	0.76
Non-Cytoplasmic	269	632	0.55