YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|82703807, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIRKMSYIF YLVTGVLISL LTLFVALRFF ELRKLNEAEN VRYAGFLAVD ELRQSSDDLT  60
   61 RTARAYVATG NPKFEQIYFD ILAIRNGDKE RPLHYERGHW DLILGHLNPE SAPGRRISLR 120
  121 SQIRKLGFTA TELAKLTKAE NRSNQLTERE YKAFNAMKGL FQDSAGEFGV KGAPDAALAS 180
  181 SLLHDESYHT AKAEIIRLLN EFHELLDKRT RNTMALAQNR ANLYISGVFF MLAFLMAWFA 240
  241 FSYRVVHRKV QNLAWLEDKA RNIGEASNSP SFYIDSNDEI GSLSRAFIVA QAERDRYFNQ 300
  301 SLNFLAISGF DNRFKRVNTA WTKVFGYSEE ELLSKPFMDL VFSGSRADTA AELDKLVMGS 360
  361 NVSFESQMRC KDGSFRWVLW NIAAAQDVRE FYFSGQDITA RKNIERELQN ARKAAEAANR 420
  421 AKSEFLANMS HEIRTPMNGV LGAVGLLLNT TLTPSQRELA GLARASGETL LCIINDILDF 480
  481 SKIEAGKLVI SPVPFDLLQA VEEVAGMVAM QPARKANVNV IVRYLPNVPR YVFGDLGRIR 540
  541 QVLINLTNNA IKFTDKGHVL IDVEAEALSE DEVSLRISVE DSGLGIAPDK LQSIFDKFTQ 600
  601 ADASTTRRYG GTGLGLAISK QLVQLMGGTI AAKSRVGAGS TFWFTLPLAL QKNWPTDAGL 660
  661 HIDLTHVRVL IVDDNAANRL VLQEQLRSWR MRIGSCPSGA EALRALHTSH ASGDPYRIAI 720
  721 LDHQMPDMDG EMLGRTIKAD PLLRSIHLVM LSSLGQEGDL RERLQKIGFA AYLVKPARQS 780
  781 ELLSTLVNIW DAQRHQRTIN LISQPFFPAN PEMQAADSSN GLFAGTRVLL AEDNATNQIV 840
  841 GAMILRNLGC LVDVATNGRE AMEMVDAFLY DMVFMDCEMP EMDGFEATAA LRRRPDSKSR 900
  901 LPVIAVTAQA MQGDRERCLR AGMDDYISKP VKLEDFAAAL KRWMPGREQG QKSETSPTAR 960
  961 HEKSMADSTP NHSPPIVPSS LPVSSSLSMS SASSALNAEV VARLRSLAEA TDPSLITQIF1020
 1021 TSFLSDGAKR IDALKEALAG GNMELLHKTA HAIKGASANI GAHSLTDMAQ KLELAGKAGD1080
 1081 MTGAVTLIEQ IEMEFGRVQH EITQSELDCV ALPDATRP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle