YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82702101, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSPLVHPS EELSKEEISR YSRHLLIPDV GLEGQQRLKN SKVLVIGAGG LGSPTLLYLA  60
   61 AAGVGTLGII DFDIVDESNL QRQVIHRQQD IGRPKCRSAQ DSVKALNPYI QVRIHDERLE 120
  121 TTNAIDIISD YDLVIDGTDN FSTRYLVNDA CVLAGKPYVW GSIFRFEGQA SVFWEDAPGG 180
  181 RGLNYRDLYP EPPPPEMAPS CAEGGVLGIL CASIGAIMAT EAIKLITGLG NTLLGRLAVY 240
  241 DALDMTFRFI PLRRAPVRTP ITRLIDYQAF CGLPQSTTGG KPNVPTISAL ELKEMRDCSV 300
  301 AMQLIDVRGI QEWNIVHIEG ANHIPKDRMM SEEVLARLNK DELIVLHCKM GVRSRDILME 360
  361 MRKRGFTNVK SLDGGILAWI RDVDQTLPSY

Type	Start	End	Confidence
Cytoplasmic	1	42	0.69
Transmembrane Helix	43	65	0.59
Non-Cytoplasmic	66	390	0.88