YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81428880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKRWLKWS LISVVILIVI GVFGATLYMY QYAFVPGQKS FLNNGKPSKF YRDNQKWLAK  60
   61 ADKVKWYQKS ATDDLKLDAI YVPAAKKTTK TIVVAHGYMG YKEDMARYIH LYHDLGYNVL 120
  121 APDDRGSGES EGDYIGYGWP DRLDYVKWIK QVIAKNGQDS QIALFGVSMG GATVMYTAGE 180
  181 KLPKQVKAVI EDCGYSSISG ELAYQLNDLF GLPKFPLFYT TNLMARVRAG YNFSEGDATK 240
  241 SLAKSKLPIM LIHGAKDKFV PTKMVYENYK AANAPKQLWV VPDAGHGEAL AKQPTAYRNK 300
  301 VAKFLDQYWE K

Type	Start	End	Confidence
Cytoplasmic	1	8	0.55
Transmembrane Helix	9	25	0.54
Non-Cytoplasmic	26	311	0.97